Omics · study · 2026
Transcriptome analysis of high- and low-growth Pacific abalone (Haliotis discus hannai)
Listed in NCBI GEO
Pacific abalone (Haliotis discus hannai) is one of the most important aquaculture species in East Asia, and growth performance is a key trait for stable and efficient production.
Description
To better understand the molecular differences associated with growth variation in this species, we conducted transcriptome profiling of high-growth and low-growth Pacific abalone groups showing significant differences in growth traits. RNA-seq data were generated from hepatopancreas and mantle tissues to identify transcriptional variation associated with growth performance.
Comparison of gene expression patterns between the two growth groups provided molecular information relevant to the biological processes and regulatory pathways underlying growth differences in Pacific abalone.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE328nnn/GSE328229 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328229 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1454404 ncbi.nlm.nih.gov/bioproject/PRJNA1454404 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Fisheries sciences 69% · RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE328229 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3005 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |