Omics · study · 2026
Deep Invaginations of Nuclear Envelope Coordinate Spatial Organization of Chromatin in Epithelium (Part A: 7d and 2h grown epithelium)
Listed in NCBI GEO
Cell nuclei are often used to assess cell health, but how their shapes vary in normal tissues and respond to mechanical forces is not well understood.
Description
Here, we describe deep invaginations of the nuclear envelope (DINEs) as common features of epithelial cell nuclei. Our data indicates DINEs in mature epithelium in vitro and in vivo.
Our mRNAseq data compiles transcriptional profiling of these DINE-containing, mature epithelium grown for 7 d, and epithelial cells grown for 7 d and then detached and reseeded for 2 h. The data indicates correlation of DINEs with suppression of MAPK-signaling pathways.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE325nnn/GSE325370 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325370 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1439254 ncbi.nlm.nih.gov/bioproject/PRJNA1439254 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Genetics 74%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE325370 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (74%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |