Omics · study · 2026
Transcriptomic profiling of Pseudomonas aeruginosa wild-type and ΔlasB strains exposed to host-mimicking conditions
Listed in NCBI GEO
We performed stranded bulk RNA-seq to compare the transcriptomic response of Pseudomonas aeruginosa wild-type and ΔlasB mutant strains exposed to artificial sputum medium (ASM) or LB broth.
Description
Samples were collected after short- (24h) or long-term (15 days) culture to assess the effect of chronic host-like conditions. This study aims to characterize the role of LasB in adaptation to the host environment.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE303nnn/GSE303184 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE303184 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1293891 ncbi.nlm.nih.gov/bioproject/PRJNA1293891 ↗
project · from NCBI GEO
- PubMed 42310961 pubmed.ncbi.nlm.nih.gov/42310961 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE303184 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |