Omics · study · 2026
Differential transcriptomic response of Atlantic salmon to fermented sunflower meal under commercial seawater farming conditions
Listed in NCBI GEO
The study focused on the differential transcriptome of immune organs (i.e., head kidney and spleen) from farmed Atlantic salmon (Salmo salar) fed fermented sunflower meal (FSFM) at 5% and 10% in two commercial farms (CS: coast and FD: fjord location).
Description
Data showed that both head kidney and spleen (from fish fed FSFM5% at CS) up-regulated mRNA biogenesis (linked to lipid metabolism and mRNA surveillance) as well as glycosyltransferases (associated with vitamin B6 and lipoic acid metabolism, or pantothenate and CoA biosynthesis).
Regarding FD, head kidney from FSFM10% group had up-regulated enzymes (related to lysosome, glutathione metabolism, ribosomes and fatty acid elongation) and the downregulation of transcription machinery and DNA repair/recombination proteins (involved in nucleocytoplasmic transport or spliceosome)
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE307nnn/GSE307205 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307205 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1314757 ncbi.nlm.nih.gov/bioproject/PRJNA1314757 ↗
project · from NCBI GEO
- PubMed 42008906 pubmed.ncbi.nlm.nih.gov/42008906 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Agricultural biotechnology 69%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE307205 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3001 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |