Data · dataset · 2025
IncP6 plasmid analysis in “One Health” surveillance and comparison of global plasmid sequences
Listed in ScienceDB
Description
Methods
Analyzed global distribution features of IncP6 plasmids using the Plasmids in Pathogens Database (PIPdb). Collected human-, animal-, environmental-, and food-derived samples from Henan Province, China under the One Health framework. Screen for carbapenem-resistant strains, perform plasmid incompatibility group typing on the resistant strains, and conduct preliminary identification and antimicrobial susceptibility testing on the screened carbapenem-resistant strains harboring IncP6-type plasmids.
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Sequences of chromosomal and plasmid genomes were obtained using combined second- and third-generation sequencing technologies. The genetic correlation between the IncP6 plasmid sequences carrying blaKPC-2 gene and the similar plasmid sequences in global public databases was analyzed by core genome, pan-genome and average nucleotide consistency analysis.Results IncP6 plasmids demonstrated intercontinental dissemination (across 6 continents), are carried by bacteria from 39 species across 17 genera, and have been detected in animal, human, food, and environmental samples.
The blaKPC-2-carrying IncP6 plasmid exhibited broad host adaptability, extensive geographical distribution, and cross-niche persistence. An environmental isolate of Raoultella ornithinolytica from Henan carried an IncP6 plasmid harboring blaKPC-2. This strain displayed a multidrug-resistant phenotype with multiple resistance genes.
The identified IncP6 plasmid showed a certain genetic distance from related plasmids in public databases and carried both the epidemic core resistance structure (ISKpn6/blaKPC-2/ΔblaTEM-1/ISKpn27) and a novel mobile genetic element (IS15DIV/msrE/mphE/IS15DIV).Conclusion The IncP6 plasmid is widely present globally, blaKPC-2-carrying IncP6 plasmid demonstrates stability and transmissibility. It has been transferred across animal-human-environmental compartments.
Monitoring the molecular characteristics and global spread of blaKPC-2-carrying IncP6 plasmid from a "One Health" perspective is of significant importance.Objective This study aims to explore the global dissemination and genomic characteristics of IncP6-type plasmids carrying the Klebsiella pneumoniae carbapenemase (KPC)-encoding blaKPC-2 from a "One Health" perspective.
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Where it is published
- DOI doi.org/10.57760/sciencedb.j00253.01707 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Medicine & Health · Social Science
- Inferred from text
- Bioinformatics and computational biology 68% · Sequencing 75%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.j00253.01707 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3102 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (68%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |