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Data · dataset · 2026

Toxic cyanobacteria database (TcDB)

Listed in ScienceDB

TcDB is a specialized database dedicated to toxin-producing cyanobacteria.

Description

Relevant information on both toxic and non-toxic cyanobacteria (at the genus, species, and strain levels) was systematically collected from the Web of Science database. The compiled data were organized into two separate files: TcDB_Toxic.xlsx and TcDB_nonToxic.xlsx.The TcDB_Toxic.xlsx table contains information on 475 toxic strains, including the following fields: availability of the 16S rRNA gene for download from NCBI, genus, species, strain, toxin-encoding gene, toxin type, toxin name, toxin abbreviation, detailed toxin characteristics, and corresponding references.The TcDB_nonToxic.xlsx table comprises 225 non-toxic strains, with data categorized into five columns: availability of the 16S rRNA gene from NCBI, genus, species, strain designation, and references.Subsequently, each identified strain was individually queried on the NCBI database, and all accessible full-length 16S rRNA gene sequences were retrieved.

These sequences were further assembled into three FASTA‑format datasets, designated as TcDB_Toxic_strain.fasta, TcDB_Toxic_species.fasta, and TcDB_nonToxic_strain.fasta.

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Where it is published

Catalogue records · 1

Topics

Inferred from text
Tabular 65%
Provenance · 1 source records, 11 field assertions
SourceKeyLast seenRaw
ScienceDB10.57760/sciencedb.349849 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:earth-environmentalmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:engineeringmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:humanitiesmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:life-sciencesmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:social-sciencemapping · scidb cnconnector:scidb_cn@1.0.0
concepts[modality].local:modality:tabularenrichment · scidb cnkeyword-concept-rules@1.0.0title+description (65%)
descriptionsource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/description
license_textsource · scidb cnconnector:scidb_cn@1.0.0
publication_datesource · scidb cnconnector:scidb_cn@1.0.0
titlesource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/title