Omics · study · 2026
ALKBH5 Downregulation Links Glucose-Induced m⁶A Remodeling to Impaired Basal Insulin Secretion in Pancreatic β Cells
Listed in NCBI GEO
N6-methyladenosine (m⁶A) and N6,2’-O-dimethyladenosine (m6Am) are dynamic RNA modifications that regulate gene expression and cellular responses to metabolic changes, but their role in pancreatic β-cell adaptation to glucose remains incompletely defined.
Description
To investigate the impact of glucose stimulation on epitranscriptomic regulation, we exposed INS 1 β-cells to 25 mM glucose for 2, 24, and 72 hours and quantified m⁶A/m levels using a colorimetric assay.
A transient increase in m⁶A/m was observed at 24 hours, with no significant changes at 2 or 72 hours, suggesting a time-dependent methylation response to glucose, with the 24-hour time point potentially representing a transitional phase between adaptive and maladaptive β-cell responses to hyperglycemia. To elucidate the molecular mechanisms underlying this change, we performed RNA sequencing (RNA-seq), identifying 21 differentially expressed m⁶A regulators (17 upregulated, 4 downregulated), including significant downregulation of Alkbh5 (m6A demethylase), while Fto (m6A and m6Am demethylase) remained unchanged, suggesting that the observed methylation changes originate from m⁶A changes rather than m⁶Am.
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Immunochemistry analysis further confirmed a reduction in ALKBH5 protein levels, reinforcing its role in glucose-induced m⁶A methylation changes. Functionally, β-cells cultured in high glucose for 24 hours displayed impaired basal insulin secretion, which was rescued by Alkbh5 overexpression, indicating a direct link between m⁶A dynamics and β-cell secretory function. To assess whether these epitranscriptomic changes were driven by reactive oxygen species (ROS), we compared glucose-treated cells with those exposed to glucose oxidase (generates extracellular H₂O₂) or menadione (generates intracellular superoxide).
The distinct expression patterns of m⁶A regulators in each condition suggest that glucose-induced changes occur independently of ROS signaling. Collectively, our findings reveal a glucose-dependent, ROS-independent modulation of β-cell m⁶A methylation, mediated in part by ALKBH5 downregulation. This regulatory axis may contribute to β-cell dysfunction under hyperglycemic stress, offering new insights into the epitranscriptomic mechanisms underpinning glucose homeostasis and diabetes pathogenesis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE307nnn/GSE307298 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307298 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1315169 ncbi.nlm.nih.gov/bioproject/PRJNA1315169 ↗
project · from NCBI GEO
- PubMed 42068012 pubmed.ncbi.nlm.nih.gov/42068012 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- Biochemistry and cell biology 69% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE307298 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |