Omics · study · 2026
Transcriptomic analysis of NvfoxE-like knockdown in Nematostella vectensis
Listed in NCBI GEO
To investigate the role of NvfoxE-like in cnidocyte gene regulatory networks, bulk mRNA sequencing was performed on gastrula-stage Nematostella vectensis embryos (28 hours post fertilization at 24°C) following RNAi-mediated NvfoxE-like knockdown.
Description
Four paired experimental (NvfoxE-like shRNA) and scramble RNA control replicates were sequenced. Each replicate consisted of approximately 1000 injected embryos.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335078 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335078 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1477372 ncbi.nlm.nih.gov/bioproject/PRJNA1477372 ↗
project · from NCBI GEO
- PubMed 42427843 pubmed.ncbi.nlm.nih.gov/42427843 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE335078 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |