Data · dataset · 2018
Replication Data for: Extensive simple sequence repeat genotyping of potato landraces supports a major reevaluation of their gene pool structure and classification
Listed in International Potato Center
Description
A total of 742 potato landraces of all cultivated potato species were examined: S. tuberosum subsp. andigenum, putatively tetraploid (251 accessions); S. ajanhuiri, diploid (22); S. chaucha, triploid (151 accessions); S. tuberosum subsp. tuberosum, tetraploid (27 accessions); S. curtilobum, pentaploid (21 accessions); S. juzepczukii, triploid (35 accessions); S. phureja, diploid (104 accessions); S. stenotomum, diploid (131 accessions); 7 diploid wild species accessions in the northern S. brevicaule complex S. ambosinum Ochoa (1 accession), S. bukasovii Juz.
(4 accessions), and S. multiinterruptum Bitter (2 accessions); and the wild tetraploid species S. acaule Bitter (1 accession) (750 accessions in total with the 8 wild species). Selection of these wild species is based on recent amplified fragment length polymorphism (AFLP) studies that documented the northern S. brevicaule complex wild species to be the progenitors of the cultivated potatoes and S. acaule believed to be a wild species parent in the hybrid species S. juzepczukii and S. curtilobum.
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We qualify landrace collection ploidy as ‘‘putative’’ because only S. phureja has been counted in detail (19), that showed extensive examples of incorrect assumptions of ploidy as discussed above. Data of these accessions includes the accession number, taxonomic identification, ploidy (when known), locality of collection, and average number of SSR alleles per accession.
Links
Where it is published
- Dataverse dataset page data.cipotato.org/dataset.xhtml?persistentId=doi%3A10.21223%2FP3%2FIKXPR1 ↗
landing page · from data cipotato org
- DOI doi.org/10.21223/p3/ikxpr1 ↗
DOI / persistent id · from data cipotato org
Catalogue records · 1
- Dataverse API data.cipotato.org/api/datasets/:persistentId/?persistentId=doi%3A10.21223%2FP3%2… ↗
metadata API · from data cipotato org
Topics
- Stated by source
- Agricultural Sciences
- From keywords
- Economics & Finance · Life Sciences
- Inferred from text
- Agriculture, land and farm management 70%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| International Potato Center | doi:10.21223/P3/IKXPR1 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3002 | enrichment · data cipotato org | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].dataverse_subject:agricultural-sciences | source · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| concepts[field].local:field:economics-finance | mapping · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| created_date | source · data cipotato org | connector:data_cipotato_org@1.0.0 | |
| description | source · data cipotato org | connector:data_cipotato_org@1.0.0 | /description |
| publication_date | source · data cipotato org | connector:data_cipotato_org@1.0.0 | |
| title | source · data cipotato org | connector:data_cipotato_org@1.0.0 | /name |
| updated_date | source · data cipotato org | connector:data_cipotato_org@1.0.0 | |
| version_label | source · data cipotato org | connector:data_cipotato_org@1.0.0 |