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Transcriptome sequencing analysis of culm brittle phenotypes in rice TAC4/TAC4L double knockout mutants

Listed in NCBI GEO

In rice, simultaneous knockout of TAC4L (LOC_Os04g19140) and TAC4 (LOC_Os02g25230) resulted in a brittle culm and leaf phenotype, whereas single knockout of either TAC4L or TAC4 did not produce such a brittle phenotype.

Description

To elucidate the regulatory pathway underlying the brittle phenotype mediated by TAC4L and TAC4 in rice, we performed transcriptome sequencing using the penultimate culm at the heading stage.

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Stated by source
Expression profiling by high throughput sequencing
From keywords
Life Sciences
Inferred from text
Plant biology 71% · RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE32488512 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3108enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (71%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[modality].local:modality:sequencingenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title