Data · dataset · 2015
Consensus expression signatures for L1000 compounds
Listed in DataCite
In this fileset we provide our processed forms of the LINCS L1000 data.
Description
Starting with signature-level expression data from the L1000 project, we employ our pipeline (link below) to condense this information to consensus drug-level expression signatures. For a detailed overview of our approach, see the appended thinklab discussion link.
In brief, our approach has 3 steps. (1) Pool set of LINCS gold signatures corresponding to drug of interest. (2) Compute weights for each signature, based on their mean Spearman correlation values with all other signatures.
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(3) Combine Z-scores across all signatures using Stouffer's method to create a consensus signature. These drug-level consensus signatures are provided in two drug vocabularies: LINCS perturbagens and DrugBank compounds. Rows are drugs, and columns are genes (Entrez Gene IDs).
The values in both files are Z-scores, as per the LINCS L1000 standard.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/L1000_Drug_level_Consensus_Expression_Profile… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1476293 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1476293 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1476293 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Computer and information sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1476293 | 12 d ago | JSON v1 |
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| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
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| updated_date | source · DataCite | connector:datacite@1.0.0 |