Data · dataset · 2025
The data of the article"RLsite: Integrating 3D-CNN and BiLSTM for RNA-ligand binding site prediction''
Listed in ScienceDB
The dataset and code associated with the article "RLsite: Integrating 3D-CNN and BiLSTM for RNA–Ligand Binding Site Prediction", published in Chinese Physics B, are organized into several directories and scripts, each serving a specific purpose.
Description
The data folder contains the test datasets used to evaluate the model's performance, while the demo folder provides feature descriptors and example inputs utilized during the feature generation process.
Predicted results from the model are saved in the Output directory. The pkl folder includes the pre-trained model parameter files required for inference. Among the source code files, dataPre.py handles data preprocessing and formatting; main.py serves as the primary script for executing testing workflows; model.py defines the architecture of the RLsite model, combining 3D-CNN and BiLSTM modules; predict.py is responsible for loading the trained model and performing predictions; and subfunction.py contains a set of auxiliary functions that support various tasks throughout the pipeline.
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Additionally, the README.md file provides detailed instructions for setting up the environment, running the code, and reproducing the results.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.j00113.00264 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Computer Science & AI · Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Biochemistry and cell biology 70%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.j00113.00264 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (70%) |
| concepts[field].local:field:computer-science-ai | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |