Data · dataset · 2023
Afro-TB dataset
Listed in DataCite
The main zipped file contains an excel sheet (StartHERE_AFRO_TB.xlsx) and three folders.
Description
The main excel file contains the list of mutations with corresponding antibiotic resistance for each of the 13753 genomes. The file also includes the identified lineage and the country of origin for each genome.
The accession numbers are hyperlinked to the corresponding table that has the curated table of mutations with their corresponding loci (these tables are in the folder AFRO-TB_dataset). The vcf files for all the genomes can be found in the folder "AFRO_TV_VCF" and their corresponding annotated VCF files are in "AFR_TB_ANNOTATED_VCF.
Links
Where it is published
- Repository landing page springernature.figshare.com/articles/dataset/Afro-TB_dataset/21803712/1 ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.21803712.v1 ↗
DOI / persistent id · from DataCite
Documentation and papers
- Creative Commons Zero v1.0 Universal creativecommons.org/publicdomain/zero/1.0/legalcode ↗
license · from DataCite
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.21803712.v1 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.21803712.v1 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Basic medicine · Health sciences
- Inferred from text
- Tabular 65%
Related
- same asAfro-TB dataset
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.21803712.v1 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:basic-medicine | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:health-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |