Omics · study · 2026
Transcriptional profiling of a Staphylococcus aureus ΔyqeK mutant under nitric oxide stress
Listed in NCBI GEO
Staphylococcus aureus YqeK is an Ap4A hydrolase that degrades the alarmone adenosine tetraphosphate (Ap4A).
Description
Ap4A is produced by aminoacyl-tRNA synthetases as a byproduct of aminoacylation during stress. In other bacteria, excessive Ap4A accumulation has been linked to reduced oxidative and heat stress tolerance, increased antibiotic susceptibility, and reduced biofilm formation.
However, the role of Ap4A metabolism in S. aureus has not been characterized. Here, we show that deletion of yqeK results in Ap4A accumulation in S. aureus, which is exacerbated under stress conditions. The ΔyqeK mutant exhibits growth defects relative to wild-type during acetic acid and nitric oxide stress.
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Transcriptional profiling under nitric oxide stress revealed dysregulation of nucleotide biosynthesis, hallmarks of translational stress, and reduced expression of key virulence genes, including the agr quorum sensing system. Altogether, our data suggest that YqeK is critical for S. aureus stress adaptation and that Ap4A accumulation links nucleotide homeostasis and translational stress to virulence regulation.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE319nnn/GSE319509 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319509 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1423639 ncbi.nlm.nih.gov/bioproject/PRJNA1423639 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE319509 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |