Table · dataset · 2026
Southern white rhinoceros (Ceratotherium simum simum) genotype profiles : studyGR and regional population
Listed in figshare
Description
<p dir="ltr">This dataset contains individual-level microsatellite genotype profiles for southern white rhinoceros (Ceratotherium simum simum) used in the study, “Three decades later : genetic implications for managing a fragmented southern white rhinoceros <i>(</i>Ceratotherium simum simum) population in South Africa.” The dataset comprises 148 genotype profiles from the StudyGR population in Limpopo, South Africa, including individuals sampled from the historic population and recently supplemented individuals, as well as a subset of 150 genotype profiles representing the broader regional population used for comparative analyses.</p><p dir="ltr">StudyGR genotype profiles were generated from biological samples collected during routine wildlife management interventions within the reserve and analysed through the University of Pretoria's Veterinary Genetics Laboratory (VGL).
Genotyping was conducted using the RhODIS microsatellite panel for southern white rhinoceros. The dataset contains allele calls for the 24 microsatellite loci included in the original genotype profiles; 20 loci were retained for the population genetic analyses presented in the associated study. Individual samples are identified using study-specific identifiers.</p><p dir="ltr">The regional comparison dataset was selected from a larger published collection of southern white rhinoceros genotype profiles from Harper et al. (2018).
Read the rest (3 more)
A random subset of 150 individuals was selected for the analyses to provide a representative regional comparison. Multiple independent random subsets were evaluated during the study to assess the consistency of the resulting genetic diversity and population genetic metrics, with the final subset included here corresponding to the dataset used in the reported analyses.</p><p dir="ltr">The genotype data were used to assess genetic diversity, population structure, relatedness, and the genetic effects of recent supplementation within the StudyGR population.
The data also contributed to parentage and pedigree analyses and to the parameterisation of population viability models examining alternative genetic management strategies.</p><p dir="ltr">This dataset is provided as a supplementary research resource accompanying the associated dissertation and manuscript. The data should be interpreted in conjunction with the methodological information and analytical procedures described in the associated research outputs.
Because the dataset contains individual-level genetic information relating to a privately managed rhinoceros population, access and use of these data should be considered in the context of applicable data-sharing permissions and the potential sensitivity of information relating to rhinoceros populations and their management.</p>
Links
Where it is published
- DOI doi.org/10.25403/upresearchdata.33719614.v2 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Computer Science & AI · Earth & Environmental Science · Economics & Finance · Engineering · Humanities · Life Sciences · Medicine & Health · Ocean & Atmospheric Science · Social Science
- Inferred from text
- Evolutionary biology 70%
Provenance · 1 source records, 17 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/33719614 | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].anzsrc:group:3104 | enrichment · figshare com | taxonomy-embedding@1.0.0 | title+keywords+description (70%) |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |