Omics · study · 2026
Transcriptomic profiling of representative anti-sigma factor deletion mutants in Pseudomonas aeruginosa PAO1
Listed in NCBI GEO
Sigma and anti-sigma factor systems enable bacteria to rapidly remodel transcriptional programs in response to environmental changes.
Description
Pseudomonas aeruginosa relies on these regulatory modules to coordinate diverse physiological states, including motility, biofilm formation, secondary metabolism and virulence-associated behaviors. In this study, RNA sequencing was performed to characterize transcriptional changes caused by representative anti-sigma factor deletions in Pseudomonas aeruginosa PAO1.
Transcriptomic analysis of ΔPA1774, ΔflgM (PA3351) and ΔfiuR (PA0471) mutants revealed distinct regulatory states associated with SigX, FliA and FiuI pathway activation. These data provide insights into how anti-sigma factor perturbation reshapes sigma-dependent transcriptional programs and contributes to adaptive-state transitions in P. aeruginosa.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE342nnn/GSE342900 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342900 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1508295 ncbi.nlm.nih.gov/bioproject/PRJNA1508295 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE342900 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |