Omics · study · 2026
RNAseq of Cladosporium europaeum in presence of PCB congeners
Listed in NCBI GEO
Polychlorobiphenyls (PCB) are organochlorinated xenobiotics and pollute environmental matrices worldwide.
Description
Ascomycetes fungi colonize polluted soils and can transform PCB. Nonetheless, the mechanisms involved in PCB transformation by Ascomycetes fungi are still underexplored.
In this study, the Ascomycetes Cladosporium europaeum F32, isolated from a soil historically polluted with PCB, was grown in presence of 4 different PCB congeners to assess its transcriptomic response. To the authors’ knowledge, this is the first in-depth transcriptomic analysis on Ascomycetes fungi growing in presence of PCB congeners.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE330nnn/GSE330673 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330673 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1465197 ncbi.nlm.nih.gov/bioproject/PRJNA1465197 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE330673 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |