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Data · dataset · 2026

Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution

Listed in Teesside University Research Data Repository

This dataset includes RDS files containing unprocessed and processed Xenium spatial transcriptomic data, imaging mass cytometry data, and image masks.

Description

The data were generated and analyzed as part of the study by Koops et al. (Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution, Blood Cancer Discovery, 2026), focusing on the tumor microenvironment across the myeloma disease spectrum.

The complete raw dataset is available through the Gene Expression Omnibus (GEO) under accession number GSE345302.The accompanying Xenium metadata CSV file provides the information required to link the metadata provided in this dataset to the corresponding raw data files in GEO. Because the data are provided as an integrated object, basic cell identifiers may occur in more than one sample. Metadata should therefore be transferred using the GEO accession number (or tissue slide) together with the cell_id_base metadata column, rather than using the basic cell identifier alone.

Links

Where it is published

Catalogue records · 1

Topics

Inferred from text
Cancer 75% · Disease 75% · Image 75% · Imaging 75%

Related

Provenance · 1 source records, 11 field assertions
SourceKeyLast seenRaw
Teesside University Research Data Repositoryoai:data.mendeley.com/8bcwmrxp6w.317 h agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
concepts[disease].local:disease:cancerenrichment · researchdata tees ac ukkeyword-concept-rules@1.0.0title+description (75%)
concepts[disease].local:disease:diseaseenrichment · researchdata tees ac ukkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].local:field:earth-environmentalmapping · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
concepts[modality].local:modality:imageenrichment · researchdata tees ac ukkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:imagingenrichment · researchdata tees ac ukkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:mass-spectrometrymapping · researchdata tees ac ukvocabulary-mapper@1.0.0keywords['Proteomics']
descriptionsource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0/metadata/dc/description
licensesource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0/metadata/dc/rights
publication_datesource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
titlesource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0/metadata/dc/title