Data · dataset · 2022
CANTEMIST
Listed in Hugging Face Datasets
Collection of 1301 oncological clinical case reports written in Spanish, with tumor morphology mentions manually annotated and mapped by clinical experts to a controlled terminology.
Description
Every tumor morphology mention is linked to an eCIE-O code (the Spanish equivalent of ICD-O). The original dataset is distributed in Brat format, and was randomly sampled into 3 subsets.
The training, development and test sets contain 501, 500 and 300 documents each, respectively. This dataset was designed for the CANcer TExt Mining Shared Task, sponsored by Plan-TL. The task is divided in 3 subtasks: CANTEMIST-NER, CANTEMIST_NORM and CANTEMIST-CODING.
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CANTEMIST-NER track: requires finding automatically tumor morphology mentions. All tumor morphology mentions are defined by their corresponding character offsets in UTF-8 plain text medical documents. CANTEMIST-NORM track: clinical concept normalization or named entity normalization task that requires to return all tumor morphology entity mentions together with their corresponding eCIE-O-3.1 codes i.e. finding and normalizing tumor morphology mentions.
CANTEMIST-CODING track: requires returning for each of document a ranked list of its corresponding ICD-O-3 codes. This it is essentially a sort of indexing or multi-label classification task or oncology clinical coding. For further information, please visit temu.bsc.es/cantemist or send an email to encargo-pln-life@bsc.es
Links
Where it is published
- Hugging Face dataset page huggingface.co/datasets/bigbio/cantemist ↗
landing page · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/bigbio/cantemist ↗
metadata API · from Hugging Face
Topics
- From keywords
- Computer Science & AI
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | bigbio/cantemist | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[disease].local:disease:cancer | enrichment · Hugging Face | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].local:modality:text | enrichment · Hugging Face | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| license | source · Hugging Face | connector:huggingface@1.0.0 | /tags[license:*] |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |