Text · dataset · 2022
HPRD50
Listed in Hugging Face Datasets
HPRD50 is a dataset of randomly selected, hand-annotated abstracts of biomedical papers referenced by the Human Protein Reference Database (HPRD).
Description
It is parsed in XML format, splitting each abstract into sentences, and in each sentence there may be entities and interactions between those entities. In this particular dataset, entities are all proteins and interactions are thus protein-protein interactions.
Moreover, all entities are normalized to the HPRD database. These normalized terms are stored in each entity's 'type' attribute in the source XML. This means the dataset can determine e.g. that "Janus kinase 2" and "Jak2" are referencing the same normalized entity.
Read the rest (1 more)
Because the dataset contains entities and relations, it is suitable for Named Entity Recognition and Relation Extraction.
Links
Where it is published
- Hugging Face dataset page huggingface.co/datasets/bigbio/hprd50 ↗
landing page · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/bigbio/hprd50 ↗
metadata API · from Hugging Face
Topics
- Stated by source
- text
- From keywords
- Computer Science & AI
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | bigbio/hprd50 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].hf_modality:text | source · Hugging Face | connector:huggingface@1.0.0 | |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| license_text | source · Hugging Face | connector:huggingface@1.0.0 | |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |