Omics · study · 2026
Transcriptomics of hypothalamic core areas suprachiasmatic nucleus and paraventricular nucleus during spontanous daily torpor arousal in the Djungarian hamster (Phodopus sungorus).
Listed in NCBI GEO
Transcriptome analyses were performed to further disentangle hypothalamic control of spontaneous daily torpor in the Djungarian Hamster (Phodopus sungorus) acclimated to winter-like short photoperiod (SP).
Description
Samples of hypothalamic core areas suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVN) were taken about seven hours after lights on (ZT07). After a de novo assembly of transcriptomes and a mapping against RefSeq of the house mouse (Mus musculus), data from hamsters sampled with hypothermic (HT) core body temperature during torpor arousal on a torpor-day (TD) were compared with data from hamsters sampled with normothermic (NT) core body temperature on a torpor-free day (TFD).
The data must be interpreted with respect to the metabolic and seasonal context, as described in the manuscript of the original research.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE214nnn/GSE214011 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE214011 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA883627 ncbi.nlm.nih.gov/bioproject/PRJNA883627 ↗
project · from NCBI GEO
- PubMed 42171721 pubmed.ncbi.nlm.nih.gov/42171721 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE214011 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |