Omics · study · 2026
Arabidopsis NAC103 (AT5G64060) ChIP-seq and DAP-seq data
Listed in NCBI GEO
To elucidate the molecular landscape of NAC103-mediated transcriptional regulation in Arabidopsis, we combined chromatin immunoprecipitation sequencing (ChIP-seq) and DNA affinity purification sequencing (DAP-seq) to capture the comprehensive cistrome of NAC103.
Description
In this project, we employed the transgenic plants of 35S:NAC103-GFP as the material for ChIP. For DAP-seq, NAC103 protein tagged with Halo (NAC103-Halo) was expressed using Promega’s wheat germ system.
These results indicate that NAC103 can directly target promoter regions of ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1 (ASA1, AT5G05730) and Acetyl-coenzyme A Carboxylase 2 (ACC2, AT1G36180).
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE336nnn/GSE336912 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE336912 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1483568 ncbi.nlm.nih.gov/bioproject/PRJNA1483568 ↗
project · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Genome binding/occupancy profiling by high throughput sequencing · Other
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE336912 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |