Tufted Puffin (Fratercula cirrhata) 3dRADseq and msat data

Similarly, there is little information on the amount of dispersal between populations in Alaska, and between populations in Alaska and those in the southern portion of the species’ range. If genetic analyses reveal significant genetic differentiation between tufted puffins nesting in different regions of Alaska, or evidence of local adaptation, then the apparent decline in the Gulf of Alaska becomes more of a conservation concern.

There is general consensus within the tufted puffin research and management community that a study of population genetic structure is a high priority. As part of our ongoing research, we conducted genetic analysis to determine if tufted puffin nesting colonies form single or multiple conservation units, and populations show evidence of local adaptation, using traditional population genetic analysis and next-generation sequencing techniques.

Continuing analyses of genome-wide associations between environment and genetic adaptation for tufted puffins will also provide greater insight into how coastal seabird populations in the temperate North Pacific Ocean are coping with the effects of climate change.

Methods

We isolated high quality genomic DNA from 75 egg, feather, tissue, and blood samples using a salt extraction (Aljanabi and Martinez 1997). Samples were sent off to Université Laval where DNA was digested with three restriction enzymes PstI, NsiI, MspI and a library was prepared. Sequencing was done at Génome Québec at McGill University on a NovaSeq6000 S4 PE100.