Omics · study · 2026
The stability of m6A-marked transcripts is linked to cell identity in planarians [EJC KD]
Listed in NCBI GEO
Using Nanopore dRNA-Seq, we called m6A sites (minimal methylation rate of 15% in at least two replicates) across the planarian transcriptome to detect influences on m6A deposition upon depletion of the exon junction complex (EJC).
Description
We observed m6A placement according to the EJC exclusion model, albeit with an exclusion zone shifted downstream of the splice junction and dependent on exon length.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE325nnn/GSE325808 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325808 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1441992 ncbi.nlm.nih.gov/bioproject/PRJNA1441992 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE325808 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |