Data · dataset · 2026
Raw sequencing data, chromosome-level genome assembly, and annotation resources for Amphicrossus lewisiRaw sequencing data, chromosome-level genome assembly, and annotation resources for Amphicrossus lewisi
Listed in ScienceDB
This dataset provides the comprehensive genomic resources generated for Amphicrossus lewisi, including raw sequencing data, the final chromosome-level genome assembly, structural annotation, and functional annotation files.
Description
The raw data comprise PacBio HiFi, Illumina paired-end, Hi-C, and RNA-seq reads used for genome assembly, scaffolding, quality assessment, and gene annotation. The processed data include the final genome assembly, GFF3 annotation, mRNA, CDS and protein sequences, a transcript-to-gene mapping table, and an integrated gene-level functional annotation table combining results from NR, UniRef90, eggNOG, Gene Ontology, KEGG Orthology, InterPro and Pfam.The genome assembly and GFF3 annotation are consistent with the files deposited in the CNCB Genome Warehouse under accession GWHJNFC00000000.1.
The annotation resources are also synchronized with the corresponding Figshare dataset. These files are provided together in Science Data Bank for long-term preservation, data accessibility, and reproducibility of the genome assembly and annotation analyses.Related identifiers include BioProject PRJCA068772 and BioSample SAMC8080106. File checksums are provided where applicable to verify data integrity.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.43058 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Genetics 71% · RNA sequencing 65% · Sequencing 75% · Tabular 65%
Provenance · 1 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.43058 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (71%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:tabular | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |