Data · dataset · 2022
chintagunta85/species_800
Listed in Hugging Face Datasets
We have developed an efficient algorithm and implementation of a dictionary-based approach to named entity recognition, which we here use to identifynames of species and other taxa in text.
Description
The tool, SPECIES, is more than an order of magnitude faster and as accurate as existing tools. The precision and recall was assessed both on an existing gold-standard corpus and on a new corpus of 800 abstracts, which were manually annotated after the development of the tool.
The corpus comprises abstracts from journals selected to represent many taxonomic groups, which gives insights into which types of organism names are hard to detect and which are easy. Finally, we have tagged organism names in the entire Medline database and developed a web resource, ORGANISMS, that makes the results accessible to the broad community of biologists.
Links
Where it is published
- Hugging Face dataset page huggingface.co/datasets/chintagunta85/species_800 ↗
landing page · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/chintagunta85/species_800 ↗
metadata API · from Hugging Face
Topics
- From keywords
- Computer Science & AI
- Inferred from text
- Text 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | chintagunta85/species_800 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].local:modality:text | enrichment · Hugging Face | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |