Data · collection · 2025
Collaborative Research: RUI: Molecular Sentinels: Secondary Metabolites as Indicators of Environmental Change in an Antarctic Polar Desert
Listed in NASA Earthdata CMR
Antarctica habitats are unlike any others found on the planet with extreme combined variations in cold, salinity, moisture content and light availability.
Description
Soils and sediments from the Antarctic McMurdo Dry Valley’s region harbor unique microorganisms that can cope with multiple extreme conditions, however, how extremophile microbes specifically function or respond to change in these extreme habitats is still largely unknown.
This team is utilizing previously collected Antarctic McMurdo Dry Valleys (MDV) samples to evaluate differences in microbial extremophile function in response to changes in strong salinity gradients caused by warming temperatures. Comparative analyses of gene expression patterns and secondary metabolite production are being undertaken in lab-based microcosm studies with varying salinities. This work is helping to elucidate the genetic underpinnings for life in Antarctica and show how Antarctic biota evolve and adapt to a changing environment.
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Specifically, the work is showing how environmentally relevant changes in salinity will induce differential expression of secondary metabolites in isolates previously collected from the hypersaline Don Juan Pond in the western end of Wright Valley, Victoria Land in the Dry Valleys region. Transcriptomes of cell cultures under varying salinities are being sequenced and compared to determine significant changes to cellular metabolism, particularly secondary metabolic pathways.
Additional previously collected sample types (soils, glacier ice, sediments, and brines) collected from a range of salinities are being used to refine methodologies for future field work and provide training opportunities for students. The program is designed to provide strong opportunities to integrate STEM research with undergraduate education, especially at Smith College, a predominantly undergraduate women’s institution.
At least one graduate student and 4 undergraduates will be involved in the project, and some will participate in presenting results at international meetings. The program is also developing related curriculum in partnership with education specialists to be used with middle school students. This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
Links
Get the data
- zenodo.org /records/18148894 ↗
LC-MS/MS Metabolomics Community Detection Methods
download · from NASA CMR
- zenodo.org /records/15389915 ↗
Raw mass spectra of soluble metabolites from "Multi-technique characterization of iron reduction by an Antarctic Shewanella: an analog system for putative Martian biosignature identification"
download · from NASA CMR
- ncbi.nlm.nih.gov /bioproject/929211 ↗
Massilia sp. DJPM01 Genome sequencing and assembly
download · from NASA CMR
- Transcriptome of Shewanella sp. BF02_Schw ncbi.nlm.nih.gov/bioproject/?term=PRJNA1261965 ↗
download · from NASA CMR
Documentation and papers
- NSF Award Abstract nsf.gov/awardsearch/showAward.do?AwardNumber=2148730 ↗
documentation · from NASA CMR
Catalogue records · 2
- CMR record cmr.earthdata.nasa.gov/search/concepts/C4161384867-AMD_USAPDC.html ↗
catalogue entry · from NASA CMR
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C4161384867-AMD_USAPDC.umm_json ↗
metadata API · from NASA CMR
Topics
- Stated by source
- Community Dynamics · Not provided
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C4161384867-AMD_USAPDC | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biosphere/ecological-dynamics/community-dynamics | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:not-provided | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| created_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| updated_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |