Data · dataset · 2020
VirusDetect for Windows
Listed in International Potato Center
VirusDetect is a software package that can efficiently and exhaustively analyze large-scale sRNA datasets for virus identification.
Description
The program performs reference-guided assembly by aligning sRNA reads to the known virus reference database (GenBank gbvrl) as well as de novo assembly using Velvet with automated parameter optimization. The assembled contigs are compared to the reference virus sequences for virus identification.
The contigs were treated as undetermined contigs if they are not hit to any known viruses. The siRNA profile of these undetermined contigs are provided as guidance to discovery novel viruses which do not show sequence similarity with known viruses.
Links
Where it is published
- Dataverse dataset page data.cipotato.org/dataset.xhtml?persistentId=doi%3A10.21223%2FH3FE8W ↗
landing page · from data cipotato org
- DOI doi.org/10.21223/h3fe8w ↗
DOI / persistent id · from data cipotato org
Catalogue records · 1
- Dataverse API data.cipotato.org/api/datasets/:persistentId/?persistentId=doi%3A10.21223%2FH3FE… ↗
metadata API · from data cipotato org
Topics
- Stated by source
- Agricultural Sciences
- From keywords
- Computer Science & AI · Earth & Environmental Science · Life Sciences · Medicine & Health
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| International Potato Center | doi:10.21223/H3FE8W | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:agricultural-sciences | source · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| concepts[field].local:field:computer-science-ai | mapping · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| concepts[field].local:field:earth-environmental | mapping · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · data cipotato org | connector:data_cipotato_org@1.0.0 | /subjects |
| created_date | source · data cipotato org | connector:data_cipotato_org@1.0.0 | |
| description | source · data cipotato org | connector:data_cipotato_org@1.0.0 | /description |
| publication_date | source · data cipotato org | connector:data_cipotato_org@1.0.0 | |
| title | source · data cipotato org | connector:data_cipotato_org@1.0.0 | /name |
| updated_date | source · data cipotato org | connector:data_cipotato_org@1.0.0 | |
| version_label | source · data cipotato org | connector:data_cipotato_org@1.0.0 |