Data · dataset · 2025
Raw data of DAP-Seq of GiMYB76
Listed in ScienceDB
Genomic DNA from G. inflata was extracted by using phenol/ chloroform method, and purified DNA was quantified using a Qubit (Thermo Fisher Scientific).
Description
A total of 5 μg genomic DNA was sheared to ~200 bp fragments; the repaired ends were ligated Illumina-based sequencing adaptors to construct an adaptor-ligated DNA library.The ORF sequence of GiMYB76 was fused with the Halo affinity tag and expressed in vitro using TNT® SP6 Coupled Wheat Germ Extract System (Promega, Fitchburg, WI, USA).
The fusion protein was bound to magnetic Halo Tag ligand (chloroalkane) beads, isolated from the expression mixture, and verified by Western blotting with anti-Halo Tag antibody (Promega), with nonspecific proteins were washed away. HaloTag-GiMYB76 fusion proteins were incubated with 500 ng of adaptor-ligated genomic DNA library at 30 ℃ for 2 h. Unbound DNA fragments were removed by washing, and samples were heated at 98 ℃ for 10 min to release GiMYB76 bound DNA The recovered DNA was amplified by PCR using indexed TruSeq primers.
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Indexed DNA samples were subsequently pooled and size-selected to remove residual adaptor dimers. Purified DNA libraries were subjected to next generation sequencing (PE150).The DAP-Seq data used in this study are also available from the National Genomics Data Center (ngdc.cncb.ac.cn/; PRJCA039808).
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.j00210.00049 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Bioinformatics and computational biology 68% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.j00210.00049 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3102 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (68%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |