Omics · study · 2026
Identification of Enhancers and Transcription Factors Regulating Developmental and Functional Maturation of Skeletal Muscle [RNA-Seq]
Listed in NCBI GEO
We investigated transcriptional differences in skeletal muscle between neonatal and adult cattle using RNA sequencing (RNA-seq).
Description
A total of 2,785 differentially expressed genes (DEGs) were identified, including 1,416 upregulated and 1,369 downregulated genes in adult muscle compared with neonatal muscle. Genes upregulated in adult muscle included MYH7 and MB, whereas genes such as MYH3 and MYH8 were downregulated.
Notably, several canonical adult muscle markers, including MYH1 and MYH2, did not show significant differential expression between developmental stages.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE329nnn/GSE329092 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329092 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1457546 ncbi.nlm.nih.gov/bioproject/PRJNA1457546 ↗
project · from NCBI GEO
- PubMed 42589115 pubmed.ncbi.nlm.nih.gov/42589115 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE329092 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |