Omics · study · 2026
Ice-free vitrification of embryos and its impact on post-warming outcomes
Listed in NCBI GEO
Vitrification protocols are widely used for mammalian embryo cryopreservation.
Description
Post-warming outcomes are impaired by cryodamage from crystalline intracellular ice, whose formation depends on both the cooling and warming rates. Here, time-resolved X-ray diffraction measurements on bovine embryos indicated that current standard tools and protocols achieved ice-free cooling, but that intracellular ice always formed during warming.
Increasing cooling rates by a factor of ~30 over current standard rates allowed ice-free cooling and warming, even when cryoprotectant concentrations were reduced by 30%. Embryos cooled at ultrafast rates exhibited survival and developmental competence rates close to those of unvitrified controls and significantly better than those cooled at standard rates. Increased global H3K9me3 intensity was found with both standard and ultrafast cooling relative to controls, while DNA methylation (5mC and 5hmC) was comparable for all groups.
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Transcriptomic analysis indicated adhesion and cell-junction assembly genes were downregulated while DNA damage repair pathway genes were upregulated with standard cooling relative to controls, and cell-development and differentiation pathway genes were downregulated with standard cooling relative to ultrafast cooling. Embryos vitrified with the ultrafast cool protocol retain full developmental potential and can establish successful pregnancies.
Overall, increased cooling rates improved post-cryopreservation outcomes in part by minimizing ice formation, minimizing DNA damage, and preserving gene expression related to embryonic developmental functions.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE309nnn/GSE309723 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE309723 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1336806 ncbi.nlm.nih.gov/bioproject/PRJNA1336806 ↗
project · from NCBI GEO
- PubMed 42141048 pubmed.ncbi.nlm.nih.gov/42141048 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE309723 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |