Omics · study · 2026
Effects of CRP1 Overexpression on Transcriptional Levels of Genes in Tomato Roots and Leaves
Listed in NCBI GEO
The perception of pathogen-associated molecular patterns (PAMPs) by plant pattern recognition receptors triggers frontline immunity.
Description
The Fusarium oxysporum effector CRP1 acts as a dual-function protein, serving as both a virulence factor and a potent apoplastic elicitor that triggers robust immunity and a pronounced growth-defense trade-off in plants. To elucidate the molecular basis of CRP1-mediated enhanced disease resistance, we performed transcriptomic profiling of Solanum lycopersicum (tomato) plants overexpressing CRP1 (OE-CRP1-2) compared to wild-type (WT) plants.
This study investigates the extensive, tissue-specific transcriptional reprogramming induced by CRP1-triggered immunity. By comparing the leaves and roots of 5-week-old WT and OE-CRP1-2 plants, we identified differentially expressed genes (DEGs) associated with defense-related pathways, including secondary metabolite biosynthesis (e.g., flavonoid biosynthesis in leaves) and physical barrier formation (e.g., cutin, suberin, and wax biosynthesis in roots).
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These transcriptomic data provide crucial molecular insights into the spatially distinct systemic defense strategies orchestrated by a fungal effector, offering valuable genomic resources for engineering broad-spectrum disease resistance in crops.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE341nnn/GSE341900 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341900 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1504599 ncbi.nlm.nih.gov/bioproject/PRJNA1504599 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Disease 75%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE341900 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |