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Structure · dataset · 2026

<p>Example model space.</p>

Listed in ZivaHub and Deakin Research Online and DMU Figshare — shown once because both records carry DOI 10.1371/journal.pcbi.1014774.g002

<p><b>(a)</b> The model space table encodes model subspaces as rows.

Description

Each model subspace has an ID and an associated superset PEtab problem, which includes the mathematical model. This superset problem is customized into single models according to the remaining columns, which contain semicolon-delimited lists of values that parameters (column headers) can take in the subspace.

The next subfigures represent models as graphs. Nodes (colored circles) are variables (e.g., biochemical species), and arrows are processes, e.g., conversion (• •), import (, or export () of the variables. The arrows are annotated with their associated parameters, e.g., k_4 is the rate constant associated with export of variables <i>A</i> and <i>B</i> due to an interaction between <i>A</i> and <b><i>B</i>.

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(b,c)</b> Each subspace is associated with a superset model, where all possible parameters are estimated. Based on the superset models, candidate models are encoded by turning (estimation of unknown) parameters on or off. The total number of models in this example is 16 in subspace supersetA_models, plus (c’) 8 in subspace supersetB_models.</p>

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Inferred from text
Tabular 65%
Provenance · 3 source records, 36 field assertions
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ZivaHuboai:figshare.com:article/340368107 d agoJSON v1
Deakin Research Onlineoai:figshare.com:article/340368107 d agoJSON v1
DMU Figshareoai:figshare.com:article/340368107 d agoJSON v1
FieldAssertionExtractorEvidence
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