Omics · study · 2026
Small RNA profiling of Meloidogyne javanica-induced galls in Arabidopsis thaliana at 14 days post-infection [smallRNA-seq]
Listed in NCBI GEO
This dataset contains the small RNA sequencing analysis of Arabidopsis thaliana roots during the maintenance stage of Meloidogyne javanica-induced galls.
Description
Small RNA populations were profiled in galls collected at 14 days post-infection (dpi) and in equivalent uninfected root tissues used as controls. Three independent biological replicates were analyzed per condition to characterize small RNA accumulation patterns associated with nematode feeding site maintenance.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE320nnn/GSE320193 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE320193 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1422635 ncbi.nlm.nih.gov/bioproject/PRJNA1422635 ↗
project · from NCBI GEO
- PubMed 42196344 pubmed.ncbi.nlm.nih.gov/42196344 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Non-coding RNA profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE320193 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:non-coding-rna-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |