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Table · dataset · 2026

Table 1_Whole-genome sequencing and biocontrol functional analysis of Pseudomonas chlororaphis XZL-8 for controlling poplar canker pathogen Cytospora chrysosperma.docx

Listed in figshare and Loughborough Research Repository and GRANTS Data and UP Research Data Repository — shown once because both records carry DOI 10.3389/fmicb.2026.1973011.s001

Introduction<p>Poplar canker triggered by Cytospora chrysosperma severely damages forest production, and screening efficient antagonistic bacteria is a sustainable strategy for eco-friendly disease management.

Description

This study aimed to characterize the taxonomic status, genomic features and biocontrol potential of strain XZL-8.</p>Methods<p>Polyphasic identification and whole-genome sequencing were conducted to confirm the species of strain XZL-8.

Functional annotation against NR, COG, GO and KEGG databases and antiSMASH secondary metabolite prediction were carried out to decode its functional genes. A series of in vitro antagonistic experiments, as well as detached branch inoculation assays, were implemented to verify its phenotypic traits.</p>Results<p>Strain XZL-8 was classified as Pseudomonas chlororaphis subsp. aureofaciens. A total of 22 secondary metabolite biosynthetic gene clusters were predicted in its genome; the gene clusters encoding hydrogen cyanide and pyrrolnitrin synthesis shared high homology with known reference clusters, with similarity coefficients reaching 0.85 and 0.99, respectively.

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Phenotypic assays showed that the strain inhibited the pathogen via direct antagonism, extracellular metabolites, and volatile substances. Genomic analysis further uncovered candidate genes linked to plant-beneficial properties such as hydrolytic enzyme production, HCN synthesis, and phosphate solubilization. Detached-branch assays confirmed its promising protective effect against woody stem canker.</p>Conclusion<p>Strain XZL-8 harbors abundant genetic determinants putatively linked to biocontrol and plant-beneficial traits.

In vitro and detached-branch tests demonstrated its biocontrol potential against C. chrysosperma, and therefore it is a promising candidate for developing microbial agents for the management of woody stem canker.</p>

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Inferred from text
Disease 75% · Genome sequencing 65% · Sequencing 75% · Tabular 65%
Provenance · 4 source records, 47 field assertions
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