Table · dataset · 2026
Table 1_Whole-genome sequencing and biocontrol functional analysis of Pseudomonas chlororaphis XZL-8 for controlling poplar canker pathogen Cytospora chrysosperma.docx
Listed in figshare and Loughborough Research Repository and GRANTS Data and UP Research Data Repository — shown once because both records carry DOI 10.3389/fmicb.2026.1973011.s001
Introduction<p>Poplar canker triggered by Cytospora chrysosperma severely damages forest production, and screening efficient antagonistic bacteria is a sustainable strategy for eco-friendly disease management.
Description
This study aimed to characterize the taxonomic status, genomic features and biocontrol potential of strain XZL-8.</p>Methods<p>Polyphasic identification and whole-genome sequencing were conducted to confirm the species of strain XZL-8.
Functional annotation against NR, COG, GO and KEGG databases and antiSMASH secondary metabolite prediction were carried out to decode its functional genes. A series of in vitro antagonistic experiments, as well as detached branch inoculation assays, were implemented to verify its phenotypic traits.</p>Results<p>Strain XZL-8 was classified as Pseudomonas chlororaphis subsp. aureofaciens. A total of 22 secondary metabolite biosynthetic gene clusters were predicted in its genome; the gene clusters encoding hydrogen cyanide and pyrrolnitrin synthesis shared high homology with known reference clusters, with similarity coefficients reaching 0.85 and 0.99, respectively.
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Phenotypic assays showed that the strain inhibited the pathogen via direct antagonism, extracellular metabolites, and volatile substances. Genomic analysis further uncovered candidate genes linked to plant-beneficial properties such as hydrolytic enzyme production, HCN synthesis, and phosphate solubilization. Detached-branch assays confirmed its promising protective effect against woody stem canker.</p>Conclusion<p>Strain XZL-8 harbors abundant genetic determinants putatively linked to biocontrol and plant-beneficial traits.
In vitro and detached-branch tests demonstrated its biocontrol potential against C. chrysosperma, and therefore it is a promising candidate for developing microbial agents for the management of woody stem canker.</p>
Links
Where it is published
- DOI doi.org/10.3389/fmicb.2026.1973011.s001 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
- From keywords
- Astronomy & Astrophysics · Biological control · Biological control · Biological control · Biological control · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Engineering · Humanities · Humanities · Humanities · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Microbiology · Microbiology · Microbiology · Microbiology · Ocean & Atmospheric Science · Psychology & Behavioral Science · Social Science · Social Science · Social Science
- Inferred from text
- Disease 75% · Genome sequencing 65% · Sequencing 75% · Tabular 65%
Provenance · 4 source records, 47 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/34054731 | 5 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/34054731 | 4 d ago | JSON v1 |
| GRANTS Data | oai:figshare.com:article/34054731 | 4 d ago | JSON v1 |
| UP Research Data Repository | oai:figshare.com:article/34054731 | 4 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:field:410302 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['biological control'] |
| concepts[field].anzsrc:field:410302 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['biological control'] |
| concepts[field].anzsrc:field:410302 | mapping · grantsdata jst go jp | vocabulary-mapper@1.0.0 | keywords['biological control'] |
| concepts[field].anzsrc:field:410302 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['biological control'] |
| concepts[field].anzsrc:group:3107 | mapping · grantsdata jst go jp | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:tabular | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |