Data · dataset · 2014
ALLMAPS supporting data: Yellow catfish genome assembly
Listed in DataCite
Supporting data for ALLMAPS.
Description
The data set includes yellow cat fish de novo genomic scaffolds, a combination of four tGBS maps including two genders and two mapping software JOINMAP and R/QTL - JMFemale, JMMale, BCFemale, BCMale, respectively. ALLMAPS was run to produce pseudomolecules based on these input data.
Weighting scheme for ALLMAPS was equal weights (weight=1) for each of the four input maps. Command python -m jcvi.assembly.allmaps path JM-4.bed scaffolds.fasta Changelog - 6/7/2015, updated run.sh script
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/ALLMAPS_supporting_data_Yellow_catfish_genome… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1057746 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1057746 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1057746 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Computer and information sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1057746 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |