Data · dataset · 2026
Sequencing data — [Metagenomic Detection and Customized Bioinformatic Analysis]
Listed in ScienceDB
Metagenomic identification was performed on soybean nodule samples.
Description
Upon completion of sequencing, the raw data were first processed through procedures such as splitting and quality trimming to obtain high-quality sequences termed valid data. Assembling software was used for de‑novo assembly of these valid sequences, followed by gene prediction.
The predicted genes were annotated and classified at both taxonomic and functional levels against databases including NR, KEGG and eggNOG. Meanwhile, the relative abundance of species in each sample was calculated. Based on these results, further analyses including sample similarity clustering, ordination test and differential statistical comparison were carried out.
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Low‑quality reads were filtered out, including reads containing more than 10 % ambiguous N bases, as well as reads in which bases with Q-score ≤ 15 accounted for over 50 % of total bases. The high-quality clean data generated after the above‑mentioned series of quality-control procedures were provided in FASTQ format.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.iga.001dw ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Bioinformatics and computational biology 74% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.IGA.001dw | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3102 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (74%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |