Data · dataset · 2015
Data of GWAS associated SNPs in regulatory regions
Listed in DataCite
Data file 1: DNase I hotspot samples included in FORGE analysis.
Description
A list of DNase I hotspot samples included in FORGE analysis is shown.The table lists details of the 125 ENCODE and 299 Roadmap Epigenome samples. The fields are File: file name; Lab: data-generating lab.
One of UW (University of Washington, John Stamatoyannopoulos lab), Duke:UNC:UTA (Duke University, Greg Crawford lab) or combined representing a merged dataset from both labs; Experiment type: always DNase-seq in the current implementation;
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Project
Either ENCODE or Roadmap; Cell: cell type; Tissue: tissue name derived as described above; Data type: always hotspots in the current implementation; Short name: a short sample used for plotting; Individual: either the code for the individual sample as described in Biosamples or NA if not available; GEO accession: the GEO accession where found, or “Not found” if it could not be deconvoluted. Data file 2: List of phenotypes analysed.
The list of phenotypes analysed, with non-redundant SNP counts and Pubmed identifiers for the studies involved is shown. This table is also available in the data directory of the GitHub release,github.com/iandunham/Forge.
Links
Where it is published
- Repository landing page f1000.figshare.com/articles/dataset/Data_of_GWAS_associated_SNPs_in_regulatory_re… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1288737 ↗
DOI / persistent id · from DataCite
Documentation and papers
- Creative Commons Attribution 4.0 International creativecommons.org/licenses/by/4.0/legalcode ↗
license · from DataCite
- IsSupplementTo 10.12688/f1000research.6032.1 doi.org/10.12688/f1000research.6032.1 ↗
publication · from DataCite
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1288737 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1288737 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Computer and information sciences
- Inferred from text
- Tabular 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1288737 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |