Omics · study · 2026
Mutagenicity of N-nitrosodiethylamine and its mechanism of action in liver and bone marrow of Big Blue rats evaluated using in vivo mutation assays and gene expression analysis
Listed in NCBI GEO
N-Nitrosodiethylamine (NDEA) has been extensively studied as a carcinogen especially in liver.
Description
The detection of NDEA as a contaminant in widely used drugs has led to numerous product recalls in recent years, highlighting the urgent need for improved safety measures. In this study, we examined the tissue-specific mutagenic effects of NDEA using a multi-assay approach, including cII mutation assay, Pig-a assay, Duplex Sequencing (DS), and RNA-sequencing in the liver and bone marrow of Big Blue transgenic rats.
Female rats were administered 0, 5, or 10 mg/kg body weight/day of NDEA by gavage for 28 days, with benzo[a]pyrene (75 mg/kg) included as the positive control. The animals were sacrificed 3 days after the end of treatment. Among the assays used, DS demonstrated the highest sensitivity, particularly for detecting low-frequency mutations.
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Both the cII mutation assay and DS revealed significantly higher mutation frequencies in the liver compared to bone marrow, consistent with the liver’s greater metabolic activation capacity. In contrast, the Pig-a assay in peripheral blood failed to consistently detect mutagenic effects from NDEA exposure. Mutation spectrum analysis by DS revealed a predominance of T > A transversions (35%-38%) and T > C transitions (32%-35%) in the liver, whereas mutations in bone marrow were more evenly distributed.
RNA sequencing provided supporting context, revealing significant differences in cytochrome P450 genes in the liver as key contributors to tissue-specific responses. NDEA exposure induced activation of proliferative and pro-tumorigenic pathways such as MYBL2, E2F3, and PRKAR2B signaling in liver. While bone marrow exhibited suppression of translation and immune-related pathways, including EIF2 signaling, following NDEA treatment.
These transcriptomic differences likely reflect tissue-specific susceptibility and mode of action. Overall, our study highlights the importance of integrating multiple mutation detection methods to assess tissue-specific genotoxicity. The findings underscore the critical role of metabolic activation and the regulation of proliferative, pro-tumorigenic, translational, and immune pathways in driving NDEA-induced mutagenesis, and support the use of sensitive next-generation sequencing-based approaches to enhance nitrosamine risk assessment.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE304nnn/GSE304540 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304540 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1301630 ncbi.nlm.nih.gov/bioproject/PRJNA1301630 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE304540 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |