Omics · study · 2026
Establishment of a model to study persistence in Leishmania parasites
Listed in NCBI GEO
Drug persistance is a major driver of treatment failure and clinical relapse in leishmaniasis.
Description
The primary objective of this study was identify he molecular mechanisms driving the persister phenotype in Leishmania mexicana and to map the dynamic transcriptomic transitions governing drug survival, metabolic latency, and cellular reactivation. To achieve this, we employed a Ficoll gradient centrifugation method to isolate viable, persister-like subpopulations following exposure to a lethal dose of potassium antimonyl tartrate (PAT).
We then utilized a comprehensive RNA-seq strategy across six biological comparisons (C1–C6), specifically designed to capture the acute stress response, the drug-free recovery phase, and a secondary drug rechallenge
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE332nnn/GSE332713 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE332713 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1468968 ncbi.nlm.nih.gov/bioproject/PRJNA1468968 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE332713 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |