Supplementary Data:Identification and Characterization of Ovarian Extrachromosomal Circular Deoxyribonucleic Acid in Rats with Polycystic Ovary Syndrome

<p dir="ltr">This dataset contains the supplementary data associated with the manuscript entitled “Identification and Characterization of Ovarian Extrachromosomal Circular Deoxyribonucleic Acid in Rats with Polycystic Ovary Syndrome,” submitted to Biology Direct.</p><p dir="ltr">Includes: (1) 14,987 eccDNA and 240 ecDNA elements identified by Circle-Map, along with raw counts and DESeq2-normalized counts for the samples and their associated genes (Supplementary Data 1); (2) Genes located on eccDNA/ecDNA with overlapping coordinates (Supplementary Data 2); and (3) BLAST alignments for rat ncRNA, lncRNA, snoRNA, mitochondrial tRNA (annotated by GTF), transposable elements (from UCSC RepeatMasker), and circular RNA (from CircAtlas) (Supplementary Data 3–8).</p><p dir="ltr">Each Excel workbook contains two sheets: “eccDNA” and “ecDNA.” The first row of each sheet describes the columns.

Coordinates refer to the rat reference genome used in the relevant publications. A README file containing the complete data dictionary is included. Please refer to the relevant publications for the complete methodology and genome assembly versions.</p>