Data · dataset · 2022
Whole-genome genotyping data of 323 Beninese individuals followed for malaria infections and malaria-related phenotypes
Listed in DataSuds
This dataset consists of whole-genome genotyping data for 323 Beninese individuals followed for malaria infections and malaria-related phenotypes in north Benin.
Description
Study participants belong to the Fulani, Gando, Bariba, and Otamari ethnic groups and live in sympatry in four rural villages (Goufanrou, Gorgoba, Tamande, Kouboro) located 3-15 km apart, in the Birni district of the Atacora department, a region of northwestern Benin.
Genotyping was performed on Illumina HumanOmni5-4v1 chips, in accordance with the standard protocol of Illumina Infinium HD assay. Standard quality control steps and criteria (Anderson et al. 2010) in GWAS were applied to data, resulting in a final set of 2,281,899 high-quality SNPs genotyped in 323 individuals.
Links
Where it is published
- Dataverse dataset page dataverse.ird.fr/dataset.xhtml?persistentId=doi%3A10.23708%2FKDRQMQ ↗
landing page · from dataverse ird fr
- DOI doi.org/10.23708/kdrqmq ↗
DOI / persistent id · from dataverse ird fr
Catalogue records · 1
- Dataverse API dataverse.ird.fr/api/datasets/:persistentId/?persistentId=doi%3A10.23708%2FKDRQ… ↗
metadata API · from dataverse ird fr
Topics
- Stated by source
- Medicine, Health and Life Sciences
- From keywords
- Life Sciences · Medicine & Health
- Inferred from text
- Genetics 71%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataSuds | doi:10.23708/KDRQMQ | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3105 | enrichment · dataverse ird fr | taxonomy-embedding@1.1.0 | title+keywords+description (71%) |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | /subjects |
| created_date | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | |
| description | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | /description |
| publication_date | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | |
| title | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | /name |
| updated_date | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | |
| version_label | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 |