Data · dataset · 2022
Dataset for "A serum protein network predicts the need for systemic immunomodulatory therapy in autoimmune uveitis"
Listed in IISH Dataverse
This dataset contains *SOMAscan* targeted proteomics (1305 protein analytes) of serum of 54 patients with non-infectious uveitis (HLA-B27+ anterior uveitis, idiopathic intermediate uveitis, HLA-A29+ Birdshot chorioretinopathy, and 26 sex/age matched healthy controls without ocular inflammatory disease.
Description
The raw data files (adat files with relative fluorescent units for 1305 DNA aptamers for 80 samples), metadata, supplemental table 1-3, and R scripts (markdowns) as presented in: Kuiper et al. 2021 "A serum protein network predicts the early need for systemic immunomodulatory therapy in non-infectious uveitis" see preprint on MedRxiv This dataset contains: Supplemental Table 1-3 Supplemental table 1-3.xml xml file Raw SOMAscan data MED-17-274.hybNorm.plateScale.medNorm.calibrate.20180425.adat adat file SOMAscan Quality Statement PDF file R scripts with step-by-step analyses "Figure_1.rmd" (see also "Figure_1.html") "Figure_2.rmd" (see also "Figure_2.html") "Figure_3.rmd" (see also "Figure_3.html") Metadata used in the R scripts (above) This includes data generated by Rieckmann et al., Nat Immunol. 2018 This includes data generated by Emilsson et al., Science 2018 This includes data generated by Selenter et al., Nucleic Acids Res. 2018
Links
Where it is published
- Dataverse dataset page dataverse.nl/dataset.xhtml?persistentId=doi%3A10.34894%2FQR1VFZ ↗
landing page · from datasets iisg amsterdam
- DOI doi.org/10.34894/qr1vfz ↗
DOI / persistent id · from datasets iisg amsterdam
Catalogue records · 1
- Dataverse API dataverse.nl/api/datasets/:persistentId/?persistentId=doi%3A10.34894%2FQR1V… ↗
metadata API · from datasets iisg amsterdam
Topics
- Stated by source
- Medicine, Health and Life Sciences
- From keywords
- Life Sciences · Medicine & Health
- Inferred from text
- Biochemistry and cell biology 73% · Disease 75% · Mass spectrometry 65% · Tabular 65%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| IISH Dataverse | doi:10.34894/QR1VFZ | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[disease].local:disease:disease | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3101 | enrichment · datasets iisg amsterdam | taxonomy-embedding@1.1.0 | title+keywords+description (73%) |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[modality].local:modality:mass-spectrometry | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:tabular | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| description | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /description |
| publication_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| title | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /name |
| updated_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| version_label | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 |