Data · dataset · 2025
Leishmania infantum (JPCM5) protein coding sequences
Listed in Teesside University Research Data Repository
This dataset contains the coding sequences of the 8532 L. infantum protein-coding genes annotated to date.
Description
The current version of the L. infantum (JPCM5 strain) genome was published in 2017 (González-de la Fuente et al., PMID: 29273719). Since then, it has been incorporated into different databases: NCBI, ENA, UniProt, TriTrypDB, among others.
Although the genome sequence remains the same, gene annotations have been improved by incorporating information derived from transcriptomics and proteomics studies, and bibliographic sources of articles in which particular genes/proteins were analyzed. The process following in updating the annotations has been described in the article by Camacho et al (2023. Leishmania infantum (JPCM5) Transcriptome, Gene Models and Resources for an Active Curation of Gene Annotations.
Read the rest (1 more)
Genes (Basel). 14, 866; PMID: 37107624). The archive linked to this Mendeley data entry is a Fasta file. For most of the protein-coding genes, individual entries have been created in the Mendeley data and Wikidata repositories and are searchable either by gene ID or protein name.
Links
Where it is published
- DOI doi.org/10.17632/f9sr5bgv24.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Life Sciences
- Inferred from text
- Mass spectrometry 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/f9sr5bgv24.1 | 15 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:mass-spectrometry | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |