Omics · dataset · 2017
Data from: Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact. 2017. By Bakker J, Wangensteen OS, Chapman DD, Boussarie G, Buddo D, Guttridge TL, Hertler H, Mouillot D, Vigliola L, Mariani S
Listed in Teesside University Research Data Repository
Original fasta file from Bakker et al. (2017) Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact.
Description
Scientific Reports, in press. The file includes unique sequences (dereplicated using obiuniq), after initial quality filtering, paired-end alignment and length filtering (120-135 bp), before any clustering or taxonomic assignment.
Read abundances for every sample are included as merged_sample attribute. Data also includes total reads (count attribute) and sequence lengths (seq_length attribute). See the published paper for details on sample codes and metabarcoding procedures used.
Links
Where it is published
- DOI doi.org/10.17632/489gckxbz3.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Ocean & Atmospheric Science · Sequencing
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/489gckxbz3.1 | 13 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:sequencing | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['High-Throughput Sequencing'] |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |