Data · dataset · 2026
Analogue enrichment of aromatic degradation through application of lignin-derived phenols
Listed in ZivaHub and Deakin Research Online and DMU Figshare and UCL Research Data Repository — shown once because both records carry DOI 10.17034/32632074.v1
This study employed analogue enrichment technique to stimulate the dominance of existing enzymatic activities of bacterial population responsible for degradation of polycyclic aromatic hydrocarbons (PAHs) in PAH-contaminated urban soils using naturally occurring lignin-derived phenols (13C-vanillin substrates).
Description
The influence of vanillin substrates on the 13C-signatures as identified on the 16S rRNA gene profiles present in the bacterial population were explored using metagenomic procedures _ primarily based on DNA stable isotope probing, coupled with Illumina sequencing of labelled DNA, and bioinformatics analysis (Kaiju, Hmmer and Krona).
Naturally occurring lignin-derived phenols (vanillin) are found to have influence on the phylogenetic and functional genes of the diverse bacterial population responsible for degradation of naphthalene (and PAH other cocktails) in the PAH-contaminated urban soils. The bacterial population implicated in this study are primarily from the Proteobacteria, Actinobacteria and Terrabacteria phyla. Specifically, these bacteria are Sphingomonas spp, Sphingobium spp, Bradyrhizobium spp, and Brevundimonas spp.
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These group of bacteria are found to have naphthalene dioxygenase genes upon extrapolation with hmmer software package. This study can contribute effectively to the process of decontamination of polluted land; planning and execution of effective bio-stimulation regime for major ecological restoration enterprise and bioprospecting of useful genes useful for other applications.<br><br><br>
Links
Where it is published
- DOI doi.org/10.17034/32632074.v1 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Social Science · Social Science · Social Science · Social Science
- Inferred from text
- Bioremediation 76% · Sequencing 75%
Provenance · 4 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/32632074 | 13 d ago | JSON v1 |
| Deakin Research Online | oai:figshare.com:article/32632074 | 13 d ago | JSON v1 |
| DMU Figshare | oai:figshare.com:article/32632074 | 13 d ago | JSON v1 |
| UCL Research Data Repository | oai:figshare.com:article/32632074 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:field:410303 | enrichment · zivahub uct ac za | taxonomy-embedding@1.1.0 | title+keywords+description (76%) |
| concepts[field].local:field:earth-environmental | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · rdr ucl ac uk | connector:rdr_ucl_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:social-science | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · rdr ucl ac uk | connector:rdr_ucl_ac_uk@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license_text | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |