Excel · study · 2026
Gene Regulatory Network Inference in Haloferax volcanii
Listed in NCBI GEO
Gene regulatory networks are mathematical models which predict regulatory interactions between genes and transcription factors.
Description
These models are useful as they provide testable hypothesis of gene-transcription factor interaction, which is useful for exploration in understudied organisms. The goal of this study is to systematically collect gene expression data from both environmental and knockout conditions for the model halophilic archaeon, Haloferax volcanii.
This data, alongside existing expression data sourced from the wider community, will enable the inference of a gene regulatory network, which will in turn accelerate biological discovery in the organism.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE338nnn/GSE338384 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE338384 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1494427 ncbi.nlm.nih.gov/bioproject/PRJNA1494427 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE338384 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |