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Data · dataset · 2019

Free-Energy Surface Prediction by Flying Gaussian Method: Numerical Proof

Listed in Materials Cloud Archive

Biomolecular simulations have a great potential in protein engineering, drug discovery and many other fields.

Description

Unfortunately, this method is computationally expensive, so many interesting processes cannot be routinely studied. In order to address this problem we developed Flying Gaussian method [Journal of Chemical Theory and Computation 12, 4644-4650 (2016)].

This method simultaneously simulates multiple replicas of the studied system and disfavor replicas with similar structures by artificial bias potential. The question arises how to calculate an unbiased free energy surface from a biased simulation. This dataset demonstrates together with mathematical arguments supports application of Umbrella Sampling reweighing method, despite the fact that this method is designed for methods with a time-independent bias potential.

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Where it is published

Catalogue records · 1

Topics

From keywords
Life Sciences
Inferred from text
Biochemistry and cell biology 71% · Simulation 75%
Provenance · 1 source records, 13 field assertions
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