Data · dataset · 2024
MahmoodLab/hest
Listed in Hugging Face Datasets
Model Card for HEST-1k What is HEST-1k?
Description
A collection of 1,276 spatial transcriptomic profiles, each linked and aligned to a Whole Slide Image (with pixel size < 1.15 µm/px) and metadata. HEST-1k was assembled from 180 public and internal cohorts encompassing: 26 organs 2 species (Homo Sapiens and Mus Musculus) 398 cancer samples from 25 cancer types.
HEST-1k processing enabled the identification of >1.5 million expression/morphology pairs and >76 million nuclei… See the full description on the dataset page: huggingface.co/datasets/MahmoodLab/hest.
Links
Get the data
- Hugging Face dataset page huggingface.co/datasets/MahmoodLab/hest ↗
Gated (auto) - request access on the dataset page
landing page · request access · from Hugging Face
Documentation and papers
- arXiv:2406.16192 arxiv.org/abs/2406.16192 ↗
publication · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/MahmoodLab/hest ↗
metadata API · from Hugging Face
Topics
- Stated by source
- feature extraction · image classification · image segmentation
- From keywords
- Computer Science & AI
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | MahmoodLab/hest | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[disease].local:disease:cancer | enrichment · Hugging Face | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].local:modality:image | enrichment · Hugging Face | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[task].hf_task:feature-extraction | source · Hugging Face | connector:huggingface@1.0.0 | /tags[task_categories:*] |
| concepts[task].hf_task:image-classification | source · Hugging Face | connector:huggingface@1.0.0 | /tags[task_categories:*] |
| concepts[task].hf_task:image-segmentation | source · Hugging Face | connector:huggingface@1.0.0 | /tags[task_categories:*] |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| license | source · Hugging Face | connector:huggingface@1.0.0 | /tags[license:*] |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |