Data · dataset · 2026
Findme re-analysed nanopore sequencing sample HG002
Listed in ScienceDB
This is a dataset of a re-analysis of the ONT Minion sequenced HG002 sample with FindMe to evaluate the accuracy of FindMe.
Description
The benchmark dataset was OxBS-seq of the same sample . Raw signal data was from ONT open data at s3://ont-open-data/gm24385_mod_2021.09.
Basecalling was performed by Guppy version 2.3.7,3.0.3, 3.4.1, 3.5.1, 4.5.4 and 6.4.8. Configuration details was showed in each file name. Methylome inferring was used FindMe with appropriate models according to the basecalling infomation.
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Alignment was performed by `dorado 0.9.1 align`. Methylation information was generated by modkit v0.4.4. The Pearson correlation coefficient (PCC) was calculated using `findme pcc` module.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.30504 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Bioinformatics and computational biology 73% · Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.30504 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3102 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (73%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |